If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ), 'gf_id' => 'HOM05D000719', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000719' ), 'data_identifier' => 'HOM05D000719', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000719', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '81' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'AagrBONN_evm.TU.Sc2ySwM_117.1653' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1691' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1697' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1739' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1758' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1786' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2992' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2993' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2995' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2997' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2998' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2999' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3008' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3013' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3017' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3018' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3019' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3024' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3025' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3026' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3028' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3078' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3110' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3239' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_128.6' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1089' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1346' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4859' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5410' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5466' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.14' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3910' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3912' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3914' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.883' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1485' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1487' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1511' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1513' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2724' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1458' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.681' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.689' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.185' => 'aag', 'Actinidia01903' => 'ach', 'Actinidia01906' => 'ach', 'Actinidia05605' => 'ach', 'Actinidia39442' => 'ach', 'Ah.03g138970' => 'amhyb', 'Ah.04g155550' => 'amhyb', 'Ah.14g089180' => 'amhyb', 'Ah.14g089190' => 'amhyb', 'Ah.14g089200' => 'amhyb', 'Aqoxy1G02585' => 'aox', 'Aqoxy1G02590' => 'aox', 'Aqoxy1G02594' => 'aox', 'Aqoxy1G02597' => 'aox', 'Aqoxy1G02598' => 'aox', 'Aqoxy1G04114' => 'aox', 'Aqoxy2G02425' => 'aox', 'Aqoxy2G02432' => 'aox', 'Aqoxy5G01594' => 'aox', 'Aqoxy6G00413' => 'aox', 'Aqoxy6G00414' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16PD77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z6R16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EW9UD1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMT3MR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5HWJY' => 'arhy', 'Atru.chr10.1956' => 'acertr', 'AUR62007702' => 'cqu', 'AUR62013438' => 'cqu', 'AUR62014774' => 'cqu', 'AUR62014775' => 'cqu', 'AUR62016960' => 'cqu', 'AUR62016961' => 'cqu', 'CAN.G1227.25' => 'can', 'CAN.G1458.2' => 'can', 'CAN.G1627.25' => 'can', 'CAN.G195.35' => 'can', 'CAN.G195.36' => 'can', 'CAN.G195.38' => 'can', 'CAN.G195.45' => 'can', 'CAN.G195.46' => 'can', 'CAN.G195.48' => 'can', 'CAN.G195.49' => 'can', 'CAN.G195.51' => 'can', 'CAN.G497.39' => 'can', 'CAN.G529.3' => 'can', 'CANSAT11G1608' => 'cansat', 'CANSAT35G0627' => 'cansat', 'CANSAT56G0038' => 'cansat', 'CANSAT56G0534' => 'cansat', 'CANSAT56G1431' => 'cansat', 'CANSAT78G1081' => 'cansat', 'CANSAT78G1197' => 'cansat', 'Ca_00304_v3' => 'car', 'CBR_g12094' => 'cbr', 'CBR_g12097' => 'cbr', 'CBR_g21308' => 'cbr', 'CBR_g21315' => 'cbr', 'CBR_g24126' => 'cbr', 'CBR_g24425' => 'cbr', 'CBR_g32559' => 'cbr', 'CBR_g34757' => 'cbr', 'CBR_g34758' => 'cbr', 'CBR_g34766' => 'cbr', 'CBR_g38204' => 'cbr', 'CBR_g38815' => 'cbr', 'CBR_g44498' => 'cbr', 'CBR_g44499' => 'cbr', 'CBR_g44502' => 'cbr', 'CBR_g4485' => 'cbr', 'CBR_g4497' => 'cbr', 'CBR_g6605' => 'cbr', 'Cc00_g03170' => 'ccan', 'Cc00_g03180' => 'ccan', 'Cc00_g03190' => 'ccan', 'Cc00_g35890' => 'ccan', 'Cc02_g12850' => 'ccan', 'Cc05_g10250' => 'ccan', 'Cc05_g10260' => 'ccan', 'Cc05_g10290' => 'ccan', 'Cc05_g10300' => 'ccan', 'Cc05_g10310' => 'ccan', 'CDE05G2361' => 'cde', 'Cfa000376' => 'cfa', 'Cfa000400' => 'cfa', 'Cfa000401' => 'cfa', 'Cfa000402' => 'cfa', 'Cfa000403' => 'cfa', 'Ciclev10014693m.g' => 'ccl', 'CiPaw.09G054600' => 'cil', 'CiPaw.09G054800' => 'cil', 'ClCG03G005730' => 'cla', 'ClCG03G005740' => 'cla', 'ClCG03G005750' => 'cla', 'ClCG03G005760' => 'cla', 'ClCG03G005800' => 'cla', 'ClCG03G005810' => 'cla', 'ClCG03G005820' => 'cla', 'ClCG03G005830' => 'cla', 'ClCG03G005840' => 'cla', 'COL.COLO4_25949' => 'col', 'Cpa.g.c40494' => 'cpa', 'Cpa.g.sc27.43' => 'cpa', 'Cpa.g.sc27.77' => 'cpa', 'Cpa.g.sc27.78' => 'cpa', 'Cpa.g.sc530.1' => 'cpa', 'Cpa.g.sc62.163' => 'cpa', 'Cpa.g.sc62.169' => 'cpa', 'CsaV3_1G012000' => 'csa', 'CsaV3_1G012010' => 'csa', 'CsaV3_1G012020' => 'csa', 'CsaV3_1G012030' => 'csa', 'CsaV3_1G012040' => 'csa', 'CsaV3_1G012050' => 'csa', 'CsaV3_1G012070' => 'csa', 'CSS0002951' => 'camsi', 'CSS0019276' => 'camsi', 'CSS0045051' => 'camsi', 'DCAR_008051' => 'dca', 'DCAR_008053' => 'dca', 'DCAR_019633' => 'dca', 'DCAR_019634' => 'dca', 'DCAR_019635' => 'dca', 'DCAR_021051' => 'dca', 'DCAR_021837' => 'dca', 'DCAR_027065' => 'dca', 'Dinv02879' => 'din', 'Dinv06550' => 'din', 'Dinv07523' => 'din', 'Dinv16128' => 'din', 'Dinv38113' => 'din', 'Dinv38115' => 'din', 'Duzib132G0353' => 'dzi', 'Duzib160G0292' => 'dzi', 'Duzib160G0420' => 'dzi', 'Duzib235G0448' => 'dzi', 'Duzib248G1638' => 'dzi', 'Duzib281G0001' => 'dzi', 'ECA234G0067' => 'eca', 'ECA234G0144' => 'eca', 'ECA234G1274' => 'eca', 'ECA236G0531' => 'eca', 'ECA236G0586' => 'eca', 'ECA236G0815' => 'eca', 'ECA236G2580' => 'eca', 'ECA236G2975' => 'eca', 'ECA236G3854' => 'eca', 'ECA236G4196' => 'eca', 'ECA236G4474' => 'eca', 'ECA240G2246' => 'eca', 'EL10Ac4g08257' => 'bvu', 'EL10Ac5g10477' => 'bvu', 'EL10Ac8g20313' => 'bvu', 'EL10Ac8g20315' => 'bvu', 'EL10Ac8g20316' => 'bvu', 'EL10Ac8g20317' => 'bvu', 'EL10Ac8g20318' => 'bvu', 'EL10Ac8g20321' => 'bvu', 'EL10Ac8g20323' => 'bvu', 'EL10Ac8g20324' => 'bvu', 'EL10Ac8g20326' => 'bvu', 'EL10Ac8g20327' => 'bvu', 'Eucgr.D00657' => 'egr', 'Eucgr.D00659' => 'egr', 'Eucgr.L00687' => 'egr', 'Eucgr.L00688' => 'egr', 'Eucgr.L00689' => 'egr', 'FAN02G3826' => 'fan', 'FAN11G1194' => 'fan', 'FAN11G3293' => 'fan', 'FAN11G3731' => 'fan', 'FAN12G1842' => 'fan', 'FAN15G1109' => 'fan', 'FAN16G1304' => 'fan', 'FAN16G1506' => 'fan', 'FAN16G2074' => 'fan', 'FAN16G3161' => 'fan', 'FAN16G3215' => 'fan', 'FAN21G0373' => 'fan', 'FAN21G0393' => 'fan', 'FAN21G2285' => 'fan', 'FAN25G0437' => 'fan', 'FAN25G1817' => 'fan', 'FAN25G2372' => 'fan', 'FAN25G3549' => 'fan', 'FAN27G0527' => 'fan', 'FvH4_2g09060' => 'fve', 'FvH4_3g02000' => 'fve', 'FvH4_3g04660' => 'fve', 'FvH4_3g04670' => 'fve', 'FvH4_3g04680' => 'fve', 'FvH4_3g04681' => 'fve', 'FvH4_3g04690' => 'fve', 'FvH4_6g20570' => 'fve', 'Glyma.04G121700' => 'gma', 'Glyma.06G270400' => 'gma', 'Glyma.07G193200' => 'gma', 'Glyma.07G193300' => 'gma', 'Glyma.07G193400' => 'gma', 'Glyma.07G193451' => 'gma', 'Glyma.07G193500' => 'gma', 'Glyma.07G193600' => 'gma', 'Glyma.13G183000' => 'gma', 'Glyma.13G183200' => 'gma', 'Glyma.13G183500' => 'gma', 'Glyma.13G242000' => 'gma', 'Glyma.13G242300' => 'gma', 'Glyma.13G242400' => 'gma', 'Glyma.15G071000' => 'gma', 'Glyma.15G071200' => 'gma', 'Glyma.18G225000' => 'gma', 'Glyma.18G225100' => 'gma', 'Gohir.A03G195300' => 'ghi', 'Gohir.A06G125800' => 'ghi', 'Gohir.A06G125904' => 'ghi', 'Gohir.A06G172800' => 'ghi', 'Gohir.A06G209700' => 'ghi', 'Gohir.A09G071700' => 'ghi', 'Gohir.A12G029600' => 'ghi', 'Gohir.D02G216300' => 'ghi', 'Gohir.D06G130000' => 'ghi', 'Gohir.D06G130100' => 'ghi', 'Gohir.D06G181700' => 'ghi', 'Gohir.D06G181900' => 'ghi', 'Gohir.D06G211300' => 'ghi', 'Gohir.D09G071500' => 'ghi', 'Gohir.D12G028900' => 'ghi', 'Gohir.D12G028950' => 'ghi', 'Gorai.005G244400' => 'gra', 'Gorai.006G086400' => 'gra', 'Gorai.008G029600' => 'gra', 'Gorai.010G151800' => 'gra', 'Gorai.010G152000' => 'gra', 'Gorai.010G213100' => 'gra', 'Gorai.010G213300' => 'gra', 'Gorai.010G254900' => 'gra', 'GSVIVG01006794001' => 'vvi', 'GSVIVG01023787001' => 'vvi', 'HanXRQChr09g0257541' => 'han', 'HanXRQChr10g0306901' => 'han', 'HanXRQChr11g0330211' => 'han', 'HanXRQChr11g0330251' => 'han', 'HanXRQChr11g0339341' => 'han', 'HanXRQChr11g0339371' => 'han', 'HanXRQChr11g0339391' => 'han', 'HanXRQChr11g0339421' => 'han', 'HanXRQChr15g0492041' => 'han', 'HanXRQChr15g0492231' => 'han', 'HanXRQChr16g0518251' => 'han', 'HanXRQChr17g0556011' => 'han', 'Haze_06514' => 'cav', 'Haze_06517' => 'cav', 'Haze_06524' => 'cav', 'Haze_06525' => 'cav', 'Haze_06556' => 'cav', 'Hma1.2p1_0000F.1_g000430' => 'hma', 'Hma1.2p1_0000F.1_g000490' => 'hma', 'Hma1.2p1_0144F.1_g065000' => 'hma', 'Hma1.2p1_0191F.1_g083150' => 'hma', 'Hma1.2p1_0191F.1_g083155' => 'hma', 'Hma1.2p1_0191F.1_g083170' => 'hma', 'Hma1.2p1_0191F.1_g083175' => 'hma', 'Hma1.2p1_0191F.1_g083180' => 'hma', 'Hma1.2p1_0191F.1_g083190' => 'hma', 'Hma1.2p1_0191F.1_g083220' => 'hma', 'HPP92_009352' => 'vpl', 'HPP92_016516' => 'vpl', 'HPP92_016517' => 'vpl', 'HPP92_016518' => 'vpl', 'HPP92_016527' => 'vpl', 'HPP92_027634' => 'vpl', 'HPP92_027635' => 'vpl', 'HPP92_027636' => 'vpl', 'Lalb_Chr18g0059771' => 'lal', 'Lalb_Chr20g0122021' => 'lal', 'Lalb_Chr20g0122031' => 'lal', 'Lj1A810T58' => 'lonja', 'Lj1A811T44' => 'lonja', 'Lj1C810T5' => 'lonja', 'Lj1C816T2' => 'lonja', 'Lj1P1209T19' => 'lonja', 'Lj1P794T20' => 'lonja', 'Lj1P810T16' => 'lonja', 'Lj1P811T7' => 'lonja', 'Lj1P812T14' => 'lonja', 'Lj1P812T6' => 'lonja', 'Lj2P285T31' => 'lonja', 'Lj2P285T40' => 'lonja', 'Lj3g0021465' => 'lja', 'Lj6g0022823' => 'lja', 'Lj6g0026819' => 'lja', 'Lj8C142G0' => 'lonja', 'Lj8C142T1' => 'lonja', 'Lj8P142T35' => 'lonja', 'Lj8P142T39' => 'lonja', 'Lsat_1_v5_gn_0_46281' => 'lsa', 'Lsat_1_v5_gn_0_6400' => 'lsa', 'Lsat_1_v5_gn_0_6500' => 'lsa', 'Lsat_1_v5_gn_0_6520' => 'lsa', 'Lsat_1_v5_gn_2_43561' => 'lsa', 'Lsat_1_v5_gn_4_54301' => 'lsa', 'Lsat_1_v5_gn_4_54680' => 'lsa', 'Lsat_1_v5_gn_4_54700' => 'lsa', 'Lsat_1_v5_gn_4_54780' => 'lsa', 'Lsat_1_v5_gn_5_119940' => 'lsa', 'Lsat_1_v5_gn_7_100741' => 'lsa', 'Lsat_1_v5_gn_7_100781' => 'lsa', 'Lsat_1_v5_gn_7_101100' => 'lsa', 'Lsat_1_v5_gn_8_99761' => 'lsa', 'Lsat_1_v5_gn_9_102021' => 'lsa', 'Lsat_1_v5_gn_9_102161' => 'lsa', 'Lsat_1_v5_gn_9_102220' => 'lsa', 'Lsat_1_v5_gn_9_102320' => 'lsa', 'Lsat_1_v5_gn_9_1560' => 'lsa', 'Manes.17G042600' => 'mes', 'Mapoly0001s0379' => 'mpo', 'Mapoly0021s0034' => 'mpo', 'Mapoly0021s0035' => 'mpo', 'Mapoly0021s0037' => 'mpo', 'Mapoly0021s0041' => 'mpo', 'Mapoly0024s0005' => 'mpo', 'Mapoly0024s0006' => 'mpo', 'Mapoly0032s0136' => 'mpo', 'Mapoly0032s0137' => 'mpo', 'Mapoly0038s0001' => 'mpo', 'Mapoly0038s0002' => 'mpo', 'Mapoly0038s0003' => 'mpo', 'Mapoly0038s0004' => 'mpo', 'Mapoly0038s0112' => 'mpo', 'Mapoly0038s0113' => 'mpo', 'Mapoly0040s0078' => 'mpo', 'Mapoly0045s0158' => 'mpo', 'Mapoly0071s0077' => 'mpo', 'Mapoly0071s0078' => 'mpo', 'Mapoly0073s0001' => 'mpo', 'Mapoly0074s0082' => 'mpo', 'Mapoly0080s0086' => 'mpo', 'Mapoly0084s0022' => 'mpo', 'Mapoly0084s0086' => 'mpo', 'Mapoly0091s0043' => 'mpo', 'Mapoly0094s0040' => 'mpo', 'Mapoly0097s0009' => 'mpo', 'Mapoly0106s0029' => 'mpo', 'Mapoly0109s0017' => 'mpo', 'Mapoly0117s0055' => 'mpo', 'Mapoly0117s0058' => 'mpo', 'Mapoly0121s0016' => 'mpo', 'Mapoly0121s0017' => 'mpo', 'Mapoly0121s0018' => 'mpo', 'Mapoly0121s0019' => 'mpo', 'Mapoly0121s0020' => 'mpo', 'Mapoly0134s0001' => 'mpo', 'Mapoly0134s0050' => 'mpo', 'Mapoly0145s0006' => 'mpo', 'Mapoly0145s0008' => 'mpo', 'Mapoly0145s0009' => 'mpo', 'Mapoly0145s0011' => 'mpo', 'Mapoly0145s0012' => 'mpo', 'Mapoly0149s0028' => 'mpo', 'Mapoly0206s0001' => 'mpo', 'Mapoly0212s0001' => 'mpo', 'Mapoly0212s0002' => 'mpo', 'Mapoly0220s0002' => 'mpo', 'Mapoly0237s0003' => 'mpo', 'Mapoly0237s0004' => 'mpo', 'Mapoly0237s0005' => 'mpo', 'Mapoly0244s0001' => 'mpo', 'Mapoly0244s0002' => 'mpo', 'Mapoly0244s0003' => 'mpo', 'Mapoly0248s0003' => 'mpo', 'Mapoly0266s0001' => 'mpo', 'Mapoly0266s0004' => 'mpo', 'Mapoly0391s0001' => 'mpo', 'Mapoly0595s0001' => 'mpo', 'Mapoly0654s0001' => 'mpo', 'Mapoly0967s0001' => 'mpo', 'Mapoly0994s0001' => 'mpo', 'Mapoly2340s0001' => 'mpo', 'Mapoly2776s0001' => 'mpo', 'Mapoly3313s0001' => 'mpo', 'Mapoly3320s0001' => 'mpo', 'MapolyY_B0028' => 'mpo', 'MBI02_g23399_MAGBIO' => 'mbi', 'MBI02_g23400_MAGBIO' => 'mbi', 'MBI05_g00411_MAGBIO' => 'mbi', 'MBI05_g00412_MAGBIO' => 'mbi', 'MBI05_g00413_MAGBIO' => 'mbi', 'MBI05_g00414_MAGBIO' => 'mbi', 'MBI05_g14551_MAGBIO' => 'mbi', 'MBI05_g14552_MAGBIO' => 'mbi', 'MBI05_g14553_MAGBIO' => 'mbi', 'MBI05_g24812_MAGBIO' => 'mbi', 'MBI05_g40967_MAGBIO' => 'mbi', 'MBI05_g40968_MAGBIO' => 'mbi', 'MBI05_g45076_MAGBIO' => 'mbi', 'MBI05_g45077_MAGBIO' => 'mbi', 'MBI05_g45078_MAGBIO' => 'mbi', 'MBI05_g46465_MAGBIO' => 'mbi', 'MBI10_g26044_MAGBIO' => 'mbi', 'MBI12_g16089_MAGBIO' => 'mbi', 'MBI12_g21499_MAGBIO' => 'mbi', 'MBI12_g40660_MAGBIO' => 'mbi', 'MBI12_g47907_MAGBIO' => 'mbi', 'MBI15_g19882_MAGBIO' => 'mbi', 'MBI15_g31105_MAGBIO' => 'mbi', 'MBI16_g07728_MAGBIO' => 'mbi', 'MBI16_g07731_MAGBIO' => 'mbi', 'MBI18_g18548_MAGBIO' => 'mbi', 'MBI18_g18551_MAGBIO' => 'mbi', 'MBI18_g35242_MAGBIO' => 'mbi', 'MBI18_g39748_MAGBIO' => 'mbi', 'MD05G1318900' => 'mdo', 'MD05G1319100' => 'mdo', 'MD05G1319300' => 'mdo', 'MD05G1319400' => 'mdo', 'MD05G1319500' => 'mdo', 'MD05G1319800' => 'mdo', 'MD05G1320100' => 'mdo', 'MD05G1320200' => 'mdo', 'MD05G1320500' => 'mdo', 'MD05G1320800' => 'mdo', 'MD10G1298200' => 'mdo', 'MD10G1298300' => 'mdo', 'MD10G1298400' => 'mdo', 'MD10G1298500' => 'mdo', 'MD10G1298700' => 'mdo', 'MD10G1299100' => 'mdo', 'MD10G1299300' => 'mdo', 'MD10G1299400' => 'mdo', 'Medtr2g013010' => 'mtr', 'Medtr2g013030' => 'mtr', 'Medtr4g036400' => 'mtr', 'Medtr4g036500' => 'mtr', 'MELO3C000806.2' => 'cme', 'MELO3C001461.2' => 'cme', 'MELO3C002576.2' => 'cme', 'MELO3C002578.2' => 'cme', 'MELO3C002579.2' => 'cme', 'MELO3C002580.2' => 'cme', 'MELO3C027837.2' => 'cme', 'Migut.H02075' => 'egut', 'Migut.H02076' => 'egut', 'Migut.H02077' => 'egut', 'Migut.M00634' => 'egut', 'Migut.M00639' => 'egut', 'Migut.M00640' => 'egut', 'Migut.M00642' => 'egut', 'Migut.M00643' => 'egut', 'Migut.M00644' => 'egut', 'Migut.M00645' => 'egut', 'Migut.M01175' => 'egut', 'MSTRG.12850' => 'ama', 'MSTRG.15010' => 'ama', 'MSTRG.15011' => 'ama', 'MSTRG.6716' => 'ama', 'MSTRG.7315' => 'ama', 'Nitab4.5_0000183g0140' => 'nta', 'Nitab4.5_0000414g0130' => 'nta', 'Nitab4.5_0000907g0080' => 'nta', 'Nitab4.5_0000907g0090' => 'nta', 'Nitab4.5_0001224g0060' => 'nta', 'Nitab4.5_0001820g0120' => 'nta', 'Nitab4.5_0002200g0010' => 'nta', 'Nitab4.5_0002276g0050' => 'nta', 'Nitab4.5_0002482g0070' => 'nta', 'Nitab4.5_0003171g0010' => 'nta', 'Nitab4.5_0005316g0010' => 'nta', 'Nitab4.5_0006480g0020' => 'nta', 'Nitab4.5_0007696g0010' => 'nta', 'Nitab4.5_0011119g0010' => 'nta', 'Nitab4.5_0012569g0040' => 'nta', 'Nitab4.5_0016289g0010' => 'nta', 'Nn1g03996' => 'nnu', 'Nn1g04944' => 'nnu', 'Nn5g29648' => 'nnu', 'Oeu001300.1' => 'oeu', 'Oeu004699.1' => 'oeu', 'Oeu005714.1' => 'oeu', 'Oeu005716.1' => 'oeu', 'Oeu005717.1' => 'oeu', 'Oeu009241.1' => 'oeu', 'Oeu009242.1' => 'oeu', 'Oeu009245.1' => 'oeu', 'Oeu009882.1' => 'oeu', 'Oeu020007.1' => 'oeu', 'Oeu020008.1' => 'oeu', 'Oeu023166.1' => 'oeu', 'Oeu058419.1' => 'oeu', 'Oeu058420.1' => 'oeu', 'Oeu058421.1' => 'oeu', 'Oeu058422.1' => 'oeu', 'Oeu058423.1' => 'oeu', 'Oeu058424.1' => 'oeu', 'Oeu058425.1' => 'oeu', 'Os01g0793100' => 'osa', 'Os01g0793300' => 'osa', 'Os04g0624100' => 'osa', 'Os04g0624400' => 'osa', 'Os04g0624450' => 'osa', 'Os04g0624500' => 'osa', 'Peaxi162Scf00119g01533' => 'pax', 'Peaxi162Scf00445g00064' => 'pax', 'Peaxi162Scf00445g00092' => 'pax', 'Peaxi162Scf00445g00613' => 'pax', 'Peaxi162Scf00524g00006' => 'pax', 'Peaxi162Scf00524g00026' => 'pax', 'PGR004G2787' => 'pgr', 'PGSC0003DMG400018913' => 'stu', 'PGSC0003DMG400018914' => 'stu', 'PGSC0003DMG400018916' => 'stu', 'PGSC0003DMG400018917' => 'stu', 'PGSC0003DMG400018918' => 'stu', 'PGSC0003DMG400018919' => 'stu', 'PGSC0003DMG400018923' => 'stu', 'PGSC0003DMG400018924' => 'stu', 'PGSC0003DMG400018925' => 'stu', 'PGSC0003DMG400022430' => 'stu', 'PGSC0003DMG400029575' => 'stu', 'PGSC0003DMG400029576' => 'stu', 'Phvul.002G225600' => 'pvu', 'Phvul.006G188500' => 'pvu', 'Phvul.008G073200' => 'pvu', 'Potri.001G387900' => 'ptr', 'Potri.001G388100' => 'ptr', 'Potri.001G388200' => 'ptr', 'Potri.001G388300' => 'ptr', 'Potri.001G388450' => 'ptr', 'Potri.001G388600' => 'ptr', 'Potri.001G388801' => 'ptr', 'Potri.001G388900' => 'ptr', 'Potri.004G038500' => 'ptr', 'Potri.004G156500' => 'ptr', 'Potri.011G047200' => 'ptr', 'Potri.011G047300' => 'ptr', 'Potri.011G108200' => 'ptr', 'Potri.011G108300' => 'ptr', 'Pp3c15_5370' => 'ppa', 'Pp3c15_5450' => 'ppa', 'Pp3c18_12100' => 'ppa', 'Pp3c18_15100' => 'ppa', 'Pp3c19_20540' => 'ppa', 'Pp3c1_38520' => 'ppa', 'Pp3c21_15340' => 'ppa', 'Pp3c21_17370' => 'ppa', 'Pp3c22_11130' => 'ppa', 'Pp3c23_21230' => 'ppa', 'Pp3c24_11260' => 'ppa', 'Pp3c5_6310' => 'ppa', 'Pp3c6_11250' => 'ppa', 'Pp3c9_14540' => 'ppa', 'Pp3c9_1620' => 'ppa', 'Prupe.4G041400' => 'ppe', 'Prupe.4G041500' => 'ppe', 'Prupe.4G041700' => 'ppe', 'Prupe.4G041800' => 'ppe', 'Prupe.4G041900' => 'ppe', 'Prupe.4G042000' => 'ppe', 'Prupe.4G042100' => 'ppe', 'Prupe.8G095500' => 'ppe', 'Psat0s1919g0160' => 'psa', 'Psat1g206360' => 'psa', 'Psat3g113960' => 'psa', 'PSO017G1378' => 'pso', 'PSO017G3725' => 'pso', 'PSO017G4486' => 'pso', 'PSO135G0355' => 'pso', 'PSO135G0478' => 'pso', 'PSO170G1476' => 'pso', 'PSO210G5235' => 'pso', 'PSO229G0070' => 'pso', 'PSO266G0075' => 'pso', 'PSO339G0053' => 'pso', 'PSO339G1439' => 'pso', 'PSO356G0017' => 'pso', 'PSO357G0432' => 'pso', 'PSO384G0585' => 'pso', 'PSO384G4125' => 'pso', 'PSO407G0058' => 'pso', 'PSO478G0533' => 'pso', 'PSO478G2672' => 'pso', 'PSO541G0725' => 'pso', 'PSO541G1722' => 'pso', 'PSO541G2257' => 'pso', 'PSO541G2901' => 'pso', 'PSO541G2952' => 'pso', 'PSO675G0434' => 'pso', 'PSO675G0482' => 'pso', 'PSO675G0627' => 'pso', 'PSO675G0925' => 'pso', 'PSO675G0962' => 'pso', 'PSO675G3103' => 'pso', 'PSO675G3683' => 'pso', 'PSO675G8068' => 'pso', 'PSO675G8293' => 'pso', 'PSO675G8440' => 'pso', 'PSO675G9316' => 'pso', 'PSO724G0590' => 'pso', 'PSO724G0919' => 'pso', 'PSO782G3366' => 'pso', 'QL05p039110' => 'qlo', 'QL10p056614' => 'qlo', 'QL10p056623' => 'qlo', 'RcHm_v2.0_Chr5g0007621' => 'rch', 'RcHm_v2.0_Chr5g0007711' => 'rch', 'RcHm_v2.0_Chr5g0007721' => 'rch', 'RcHm_v2.0_Chr5g0007731' => 'rch', 'RcHm_v2.0_Chr6g0264851' => 'rch', 'RcHm_v2.0_Chr6g0264871' => 'rch', 'RcHm_v2.0_Chr6g0264881' => 'rch', 'Rhsim02G0123300' => 'rsi', 'RhsimUnG0043200' => 'rsi', 'Sabra04G0104500' => 'sbr', 'Sabra04G0104600' => 'sbr', 'Sabra11G0032800' => 'sbr', 'Sabra11G0096000' => 'sbr', 'Sabra16G0255200' => 'sbr', 'Sabra16G0255300' => 'sbr', 'SalBow1G5427' => 'sbo', 'SalBow2G3161' => 'sbo', 'SalBow6G3460' => 'sbo', 'SalBow6G3479' => 'sbo', 'SalBow7G0168' => 'sbo', 'SalBow7G0400' => 'sbo', 'SalBow7G2470' => 'sbo', 'SalBow7G3131' => 'sbo', 'SalBow8G0093' => 'sbo', 'SalBow8G0304' => 'sbo', 'SalBow8G0332' => 'sbo', 'SalBow8G0432' => 'sbo', 'SalBow8G1695' => 'sbo', 'SalBow8G1943' => 'sbo', 'SalBow8G2188' => 'sbo', 'SalBow8G2886' => 'sbo', 'SalBow8G3365' => 'sbo', 'SalBow8G3530' => 'sbo', 'SalBow8G3750' => 'sbo', 'SalBow8G4117' => 'sbo', 'SalBow8G4151' => 'sbo', 'SalBow8G4545' => 'sbo', 'SalBow8G5095' => 'sbo', 'SalBow8G5235' => 'sbo', 'Sed0011192' => 'sed', 'Sed0012641' => 'sed', 'Sed0016274' => 'sed', 'SEGI_01758' => 'sgi', 'SEGI_03142' => 'sgi', 'SEGI_05048' => 'sgi', 'SEGI_06768' => 'sgi', 'SEGI_06787' => 'sgi', 'SEGI_10260' => 'sgi', 'SEGI_10651' => 'sgi', 'SEGI_14677' => 'sgi', 'SEGI_16555' => 'sgi', 'SEGI_21331' => 'sgi', 'SEGI_22506' => 'sgi', 'SEGI_24426' => 'sgi', 'SEGI_24487' => 'sgi', 'SEGI_29755' => 'sgi', 'SEGI_30434' => 'sgi', 'SEGI_32400' => 'sgi', 'SEGI_35899' => 'sgi', 'SEGI_39889' => 'sgi', 'SEGI_40890' => 'sgi', 'SEGI_40954' => 'sgi', 'SEGI_41561' => 'sgi', 'SGA_v2.0_scaffold130G34234' => 'sas', 'SGA_v2.0_scaffold130G34235' => 'sas', 'SGA_v2.0_scaffold22G09767' => 'sas', 'SGA_v2.0_scaffold44G16600' => 'sas', 'SGA_v2.0_scaffold4G02133' => 'sas', 'SGA_v2.0_scaffold73G24349' => 'sas', 'SMO114G0148' => 'smo', 'SMO117G0049' => 'smo', 'SMO143G0003' => 'smo', 'SMO143G0226' => 'smo', 'SMO172G0014' => 'smo', 'SMO172G0098' => 'smo', 'SMO172G0121' => 'smo', 'SMO198G0019' => 'smo', 'SMO198G0044' => 'smo', 'SMO235G0040' => 'smo', 'SMO246G0008' => 'smo', 'SMO246G0010' => 'smo', 'SMO246G0019' => 'smo', 'SMO347G0346' => 'smo', 'SMO364G0782' => 'smo', 'Solyc02g078650.4' => 'sly', 'Solyc08g074620.3' => 'sly', 'Solyc08g074630.2' => 'sly', 'Solyc08g074640.1' => 'sly', 'Solyc08g074650.4' => 'sly', 'Solyc08g074680.3' => 'sly', 'Solyc08g074682.1' => 'sly', 'Solyc08g074683.1' => 'sly', 'Solyc08g074690.3' => 'sly', 'Sopen02g023510' => 'spe', 'Sopen08g023210' => 'spe', 'Sopen08g023220' => 'spe', 'Sopen08g023230' => 'spe', 'Sopen08g023240' => 'spe', 'Sopen08g023270' => 'spe', 'Sopen08g023280' => 'spe', 'Sopen08g023300' => 'spe', 'Sopen08g023310' => 'spe', 'TAR381G1432' => 'tar', 'TAR574G0002' => 'tar', 'TAR574G0004' => 'tar', 'TAR574G0005' => 'tar', 'TAR626G0848' => 'tar', 'TAR626G1589' => 'tar', 'TAR628G0344' => 'tar', 'TAR629G1953' => 'tar', 'Thecc.02G083300' => 'tca', 'Thecc.02G083400' => 'tca', 'Thecc.02G083500' => 'tca', 'Thecc.04G169600' => 'tca', 'Thecc.06G192300' => 'tca', 'Thecc.06G192400' => 'tca', 'Thecc.06G192700' => 'tca', 'Thecc.06G192800' => 'tca', 'Thecc.06G192900' => 'tca', 'Thecc.06G193000' => 'tca', 'TPR.G13141' => 'tpr', 'TPR.G14726' => 'tpr', 'TWI75G0590' => 'twi', 'TWI75G1054' => 'twi', 'unitig_27.g25335' => 'ugi', 'unitig_27.g25336' => 'ugi', 'unitig_27.g25337' => 'ugi', 'unitig_27.g25338' => 'ugi', 'vmacro03795' => 'vma', 'vmacro03796' => 'vma', 'vmacro03841' => 'vma', 'vmacro15888' => 'vma', 'VMungo0251G1579' => 'vmu', 'VMungo0251G2480' => 'vmu', 'VMungo0540G2027' => 'vmu', 'VMungo1383G0149' => 'vmu', 'Zm00001eb151080' => 'zma', 'Zm00001eb171410' => 'zma', 'Zm00001eb388240' => 'zma', 'Zm00001eb413300' => 'zma', 'Zm00001eb428900' => 'zma', 'Zm00001eb431220' => 'zma' ) $gf_id = 'HOM05D000719' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000719' ) $data_identifier = 'HOM05D000719' $data_type = 'gf_id' $species_gene_counts = array( 'aag' => (int) 60, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 5, 'acertr' => (int) 1, 'cqu' => (int) 6, 'can' => (int) 13, 'cansat' => (int) 7, 'car' => (int) 1, 'cbr' => (int) 18, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 9, 'col' => (int) 1, 'cpa' => (int) 7, 'csa' => (int) 7, 'camsi' => (int) 3, 'dca' => (int) 8, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 12, 'bvu' => (int) 12, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 8, 'gma' => (int) 18, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 8, 'lal' => (int) 3, 'lonja' => (int) 16, 'lja' => (int) 3, 'lsa' => (int) 19, 'mes' => (int) 1, 'mpo' => (int) 67, 'mbi' => (int) 29, 'mdo' => (int) 18, 'mtr' => (int) 4, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 3, 'oeu' => (int) 19, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 1, 'stu' => (int) 12, 'pvu' => (int) 3, 'ptr' => (int) 14, 'ppa' => (int) 15, 'ppe' => (int) 8, 'psa' => (int) 3, 'pso' => (int) 37, 'qlo' => (int) 3, 'rch' => (int) 7, 'rsi' => (int) 2, 'sbr' => (int) 6, 'sbo' => (int) 24, 'sed' => (int) 3, 'sgi' => (int) 21, 'sas' => (int) 6, 'smo' => (int) 15, 'sly' => (int) 9, 'spe' => (int) 9, 'tar' => (int) 8, 'tca' => (int) 10, 'tpr' => (int) 2, 'twi' => (int) 2, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431220' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1